This project is read-only.

OpenCGA doesn't use temp dir

The WebRole has a local storage "tempStorage" defined which is intended to be used for temporary files. Applications running in Tomcat (such as OpenCGA) are currently not able to retrieve any inf...

Id #13 | Release: None | Updated: Jun 26, 2013 at 5:54 PM by ameick | Created: Jun 26, 2013 at 5:54 PM by ameick

Add retry mechanism to OpenCGA

Add a retry mechanism for downloading BAM, VCF or any other kind of files. Currently Genomemaps will continue showing "loading" if there is an error during the download of a file on the OpenCGA s...

Id #12 | Release: None | Updated: Jun 26, 2013 at 3:17 PM by ameick | Created: Jun 26, 2013 at 3:17 PM by ameick

Add logging to OpenCGA server

A logging mechanism should be added as it is currently hard to debug the OpenCGA server

Id #11 | Release: None | Updated: Jun 26, 2013 at 3:15 PM by ameick | Created: Jun 26, 2013 at 3:15 PM by ameick

Publish c4s application in marketplace

First version is to be published to be tested.

Id #10 | Release: None | Updated: May 16, 2013 at 11:40 AM by hakans | Created: May 16, 2013 at 11:40 AM by hakans

Design a new filebox - file manager

The current filebox does not cover all users' needs. A new enhanced management system is needed. File management system should not be shown in each single page. It would be better to have it in ano...

Id #9 | Release: None | Updated: May 16, 2013 at 11:39 AM by hakans | Created: May 16, 2013 at 11:39 AM by hakans

Look for a WebUI test tool

We really need some automated way to test the web portal. I guess Visual Studio should have something in this area. Please have a look at that and lets start covering code with UI tests.

Id #8 | Release: None | Updated: Dec 9 at 9:50 PM by hakans | Created: May 16, 2013 at 9:44 AM by jacek_

Selected tool should be highlighted on the toolbox

Regardless of the selected operation, "Generate Reference Index" is highlighted all the time in the toolbox.

Id #7 | Release: None | Updated: Dec 9 at 9:50 PM by jacek_ | Created: May 13, 2013 at 6:15 PM by hakans

Different view options in filebox

Currently, large icons are used to show the files in the filebox. Allowing users to select view such as large icons, small icons, list, details, etc similar to windows OS will increase usability.

Id #6 | Release: None | Updated: May 13, 2013 at 6:13 PM by hakans | Created: May 13, 2013 at 6:13 PM by hakans

Filtering according to the selected tool in toolbox

The filebox shows only the possible input files according to the selected tool. For example, if the user wants to run Variant Detection, only the files whose extension is .bam should be shown in th...

Id #5 | Release: None | Updated: May 13, 2013 at 5:55 PM by hakans | Created: May 13, 2013 at 5:55 PM by hakans

Using different icon for different file types in FileBox

Currently., we have only one Icon for all filetypes. Using different Icon for different filetypes will increase usability.

Id #4 | Release: None | Updated: May 13, 2013 at 5:14 PM by hakans | Created: May 13, 2013 at 5:14 PM by hakans